I worked on hybrid vehicles for awhile and keeping track of the state of charge (SOC) is very difficult. The calibrations are performed by charging the battery all the way up and then discharging it and trying to map a voltage/current/load/SOC map. This SOC remains fairly accurate during this process, going from full charge and discharging the battery tracking current (current integration). When you start with a battery that is not fully charged and has been sitting the voltage will be elevated from when you stopped your last flight but lower than full charge, so you can tell it is not full but it is hard to place it exactly. After running on it the voltage/current output for a given load can help you place the SOC, but it is never as accurate as starting with a fully charged battery and certainly not accurate at the start, there is no way for it be. If you plot voltage versus SOC it is not linear.
So, to get the most accurate SOC tracking on the Phantom starting with a full battery is wise and is the only thing I would do. The longer the time between your first flight and second the higher the risk. Like I said, I would never do it but if I did I would try to keep track of how long I fly on a full battery charge, call that 20 min, and compare to the two flights split on a battery. If I flew 10 min and stopped and then flew the next day on the same battery, I would be pretty nervous after about 5 min...